diff --git a/docs/user-guide/structured.ipynb b/docs/user-guide/structured.ipynb index b51e6afc9..00a4008eb 100644 --- a/docs/user-guide/structured.ipynb +++ b/docs/user-guide/structured.ipynb @@ -12,9 +12,16 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 1, "id": "149f175e67dc1a07", - "metadata": {}, + "metadata": { + "execution": { + "iopub.execute_input": "2026-07-13T21:58:39.239362Z", + "iopub.status.busy": "2026-07-13T21:58:39.239233Z", + "iopub.status.idle": "2026-07-13T21:58:40.744185Z", + "shell.execute_reply": "2026-07-13T21:58:40.743636Z" + } + }, "outputs": [], "source": [ "import warnings\n", @@ -39,10 +46,610 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 2, "id": "c63337e3083b6ca5", - "metadata": {}, - "outputs": [], + "metadata": { + "execution": { + "iopub.execute_input": "2026-07-13T21:58:40.746391Z", + "iopub.status.busy": "2026-07-13T21:58:40.746198Z", + "iopub.status.idle": "2026-07-13T21:58:41.149333Z", + "shell.execute_reply": "2026-07-13T21:58:41.148588Z" + } + }, + "outputs": [ + { + "data": { + "text/html": [ + "
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<xarray.Dataset> Size: 31MB\n",
+       "Dimensions:  (time: 2920, lat: 25, lon: 53)\n",
+       "Coordinates:\n",
+       "  * time     (time) datetime64[ns] 23kB 2013-01-01 ... 2014-12-31T18:00:00\n",
+       "  * lat      (lat) float32 100B 75.0 72.5 70.0 67.5 65.0 ... 22.5 20.0 17.5 15.0\n",
+       "  * lon      (lon) float32 212B 200.0 202.5 205.0 207.5 ... 325.0 327.5 330.0\n",
+       "Data variables:\n",
+       "    air      (time, lat, lon) float64 31MB ...\n",
+       "Attributes:\n",
+       "    Conventions:  COARDS\n",
+       "    title:        4x daily NMC reanalysis (1948)\n",
+       "    description:  Data is from NMC initialized reanalysis\\n(4x/day).  These a...\n",
+       "    platform:     Model\n",
+       "    references:   http://www.esrl.noaa.gov/psd/data/gridded/data.ncep.reanaly...
" + ], + "text/plain": [ + " Size: 31MB\n", + "Dimensions: (time: 2920, lat: 25, lon: 53)\n", + "Coordinates:\n", + " * time (time) datetime64[ns] 23kB 2013-01-01 ... 2014-12-31T18:00:00\n", + " * lat (lat) float32 100B 75.0 72.5 70.0 67.5 65.0 ... 22.5 20.0 17.5 15.0\n", + " * lon (lon) float32 212B 200.0 202.5 205.0 207.5 ... 325.0 327.5 330.0\n", + "Data variables:\n", + " air (time, lat, lon) float64 31MB ...\n", + "Attributes:\n", + " Conventions: COARDS\n", + " title: 4x daily NMC reanalysis (1948)\n", + " description: Data is from NMC initialized reanalysis\\n(4x/day). These a...\n", + " platform: Model\n", + " references: http://www.esrl.noaa.gov/psd/data/gridded/data.ncep.reanaly..." + ] + }, + "execution_count": 2, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "ds_air_temp = xr.tutorial.open_dataset(\"air_temperature\")\n", "ds_air_temp" @@ -50,10 +657,644 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 3, "id": "bc0fd470a7f64504", - "metadata": {}, - "outputs": [], + "metadata": { + "execution": { + "iopub.execute_input": "2026-07-13T21:58:41.150951Z", + "iopub.status.busy": "2026-07-13T21:58:41.150714Z", + "iopub.status.idle": "2026-07-13T21:58:41.374823Z", + "shell.execute_reply": "2026-07-13T21:58:41.374313Z" + } + }, + "outputs": [ + { + "data": { + "text/html": [ + "
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<xarray.Dataset> Size: 40MB\n",
+       "Dimensions:    (time: 624, nbnds: 2, lat: 89, lon: 180)\n",
+       "Coordinates:\n",
+       "  * time       (time) datetime64[ns] 5kB 1970-01-01 1970-02-01 ... 2021-12-01\n",
+       "  * lat        (lat) float32 356B 88.0 86.0 84.0 82.0 ... -84.0 -86.0 -88.0\n",
+       "  * lon        (lon) float32 720B 0.0 2.0 4.0 6.0 ... 352.0 354.0 356.0 358.0\n",
+       "Dimensions without coordinates: nbnds\n",
+       "Data variables:\n",
+       "    time_bnds  (time, nbnds) float64 10kB ...\n",
+       "    sst        (time, lat, lon) float32 40MB ...\n",
+       "Attributes: (12/37)\n",
+       "    climatology:               Climatology is based on 1971-2000 SST, Xue, Y....\n",
+       "    description:               In situ data: ICOADS2.5 before 2007 and NCEP i...\n",
+       "    keywords_vocabulary:       NASA Global Change Master Directory (GCMD) Sci...\n",
+       "    keywords:                  Earth Science > Oceans > Ocean Temperature > S...\n",
+       "    instrument:                Conventional thermometers\n",
+       "    source_comment:            SSTs were observed by conventional thermometer...\n",
+       "    ...                        ...\n",
+       "    creator_url_original:      https://www.ncei.noaa.gov\n",
+       "    license:                   No constraints on data access or use\n",
+       "    comment:                   SSTs were observed by conventional thermometer...\n",
+       "    summary:                   ERSST.v5 is developed based on v4 after revisi...\n",
+       "    dataset_title:             NOAA Extended Reconstructed SST V5\n",
+       "    data_modified:             2022-06-07
" + ], + "text/plain": [ + " Size: 40MB\n", + "Dimensions: (time: 624, nbnds: 2, lat: 89, lon: 180)\n", + "Coordinates:\n", + " * time (time) datetime64[ns] 5kB 1970-01-01 1970-02-01 ... 2021-12-01\n", + " * lat (lat) float32 356B 88.0 86.0 84.0 82.0 ... -84.0 -86.0 -88.0\n", + " * lon (lon) float32 720B 0.0 2.0 4.0 6.0 ... 352.0 354.0 356.0 358.0\n", + "Dimensions without coordinates: nbnds\n", + "Data variables:\n", + " time_bnds (time, nbnds) float64 10kB ...\n", + " sst (time, lat, lon) float32 40MB ...\n", + "Attributes: (12/37)\n", + " climatology: Climatology is based on 1971-2000 SST, Xue, Y....\n", + " description: In situ data: ICOADS2.5 before 2007 and NCEP i...\n", + " keywords_vocabulary: NASA Global Change Master Directory (GCMD) Sci...\n", + " keywords: Earth Science > Oceans > Ocean Temperature > S...\n", + " instrument: Conventional thermometers\n", + " source_comment: SSTs were observed by conventional thermometer...\n", + " ... ...\n", + " creator_url_original: https://www.ncei.noaa.gov\n", + " license: No constraints on data access or use\n", + " comment: SSTs were observed by conventional thermometer...\n", + " summary: ERSST.v5 is developed based on v4 after revisi...\n", + " dataset_title: NOAA Extended Reconstructed SST V5\n", + " data_modified: 2022-06-07" + ] + }, + "execution_count": 3, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "ds_ersstv5 = xr.tutorial.open_dataset(\"ersstv5\")\n", "ds_ersstv5" @@ -71,10 +1312,606 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 4, "id": "d16555e6ec8dee74", - "metadata": {}, - "outputs": [], + "metadata": { + "execution": { + "iopub.execute_input": "2026-07-13T21:58:41.376508Z", + "iopub.status.busy": "2026-07-13T21:58:41.376380Z", + "iopub.status.idle": "2026-07-13T21:58:41.706957Z", + "shell.execute_reply": "2026-07-13T21:58:41.706500Z" + } + }, + "outputs": [ + { + "data": { + "text/html": [ + "
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<uxarray.Grid>\n",
+       "Original Grid Type: Structured\n",
+       "Grid Dimensions:\n",
+       "  * n_node: 1404\n",
+       "  * n_face: 1325\n",
+       "  * n_max_face_nodes: 4\n",
+       "Grid Coordinates (Spherical):\n",
+       "  * node_lon: (1404,)\n",
+       "  * node_lat: (1404,)\n",
+       "Grid Coordinates (Cartesian):\n",
+       "Grid Connectivity Variables:\n",
+       "  * face_node_connectivity: (1325, 4)\n",
+       "Grid Descriptor Variables:\n",
+       "
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<uxarray.Grid>\n",
+       "Original Grid Type: Structured\n",
+       "Grid Dimensions:\n",
+       "  * n_node: 1404\n",
+       "  * n_face: 1325\n",
+       "  * n_max_face_nodes: 4\n",
+       "Grid Coordinates (Spherical):\n",
+       "  * node_lon: (1404,)\n",
+       "  * node_lat: (1404,)\n",
+       "Grid Coordinates (Cartesian):\n",
+       "Grid Connectivity Variables:\n",
+       "  * face_node_connectivity: (1325, 4)\n",
+       "Grid Descriptor Variables:\n",
+       "
" + ], + "text/plain": [ + "\n", + "Original Grid Type: Structured\n", + "Grid Dimensions:\n", + " * n_node: 1404\n", + " * n_face: 1325\n", + " * n_max_face_nodes: 4\n", + "Grid Coordinates (Spherical):\n", + " * node_lon: (1404,)\n", + " * node_lat: (1404,)\n", + "Grid Coordinates (Cartesian):\n", + "Grid Connectivity Variables:\n", + " * face_node_connectivity: (1325, 4)\n", + "Grid Descriptor Variables:" + ] + }, + "execution_count": 5, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "uxgrid = ux.Grid.from_structured(lon=ds_air_temp.lon, lat=ds_air_temp.lat)\n", "uxgrid" @@ -99,10 +2534,1756 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 6, "id": "ab3c5ca428b99bdc", - "metadata": {}, - "outputs": [], + "metadata": { + "execution": { + "iopub.execute_input": "2026-07-13T21:58:41.716225Z", + "iopub.status.busy": "2026-07-13T21:58:41.716109Z", + "iopub.status.idle": "2026-07-13T21:58:50.511897Z", + "shell.execute_reply": 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console.log(\"Bokeh: BokehJS was loaded multiple times but one version failed to initialize.\");\n", + " load_or_wait();\n", + " } else if (root._bokeh_is_initializing || (typeof root._bokeh_is_initializing === \"undefined\" && root._bokeh_onload_callbacks !== undefined)) {\n", + " setTimeout(load_or_wait, 100);\n", + " } else {\n", + " root._bokeh_is_initializing = true;\n", + " root._bokeh_onload_callbacks = [];\n", + " const bokeh_loaded = Bokeh != null && ((Bokeh.version === version && Bokeh.Panel) || (Bokeh.versions?.has(version) && Bokeh.versions.get(version)?.Panel));\n", + " if (!reloading && !bokeh_loaded) {\n", + " if (root.Bokeh) {\n", + " root.Bokeh = undefined;\n", + " }\n", + " console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n", + " }\n", + " load_libs(css_urls, js_urls, js_modules, js_exports, Bokeh, function() {\n", + " console.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n", + " run_inline_js();\n", + " if (Bokeh != undefined && !reloading) {\n", + " const NewBokeh = root.Bokeh;\n", + " if (Bokeh.versions === undefined) {\n", + " Bokeh.versions = new Map();\n", + " }\n", + " if (NewBokeh.version !== Bokeh.version) {\n", + " Bokeh[NewBokeh.version] = NewBokeh;\n", + " Bokeh.versions.set(NewBokeh.version, NewBokeh);\n", + " }\n", + " root.Bokeh = Bokeh;\n", + " }\n", + " });\n", + " }\n", + " }\n", + " // Give older versions of the autoload script a head-start to ensure\n", + " // they initialize before we start loading newer version.\n", + " setTimeout(load_or_wait, 100)\n", + "}(window));" + ], + "application/vnd.holoviews_load.v0+json": "(function(root) {\n function now() {\n return new Date();\n }\n\n const force = true;\n const version = '3.9.0'.replace('rc', '-rc.').replace('.dev', '-dev.');\n const reloading = false;\n const Bokeh = root.Bokeh;\n const BK_RE = /^https:\\/\\/cdn\\.bokeh\\.org\\/bokeh\\/(release|dev)\\/bokeh-/;\n const PN_RE = /^https:\\/\\/cdn\\.holoviz\\.org\\/panel\\/[^/]+\\/dist\\/panel/i;\n\n // Set a timeout for this load but only if we are not already initializing\n if (typeof (root._bokeh_timeout) === \"undefined\" || (force || !root._bokeh_is_initializing)) {\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_failed_load = false;\n }\n\n function run_callbacks() {\n try {\n root._bokeh_onload_callbacks.forEach(function(callback) {\n if (callback != null)\n callback();\n });\n } finally {\n delete root._bokeh_onload_callbacks;\n }\n console.debug(\"Bokeh: all callbacks have finished\");\n }\n\n function load_libs(css_urls, js_urls, js_modules, js_exports, Bokeh, callback) {\n if (css_urls == null) css_urls = [];\n if (js_urls == null) js_urls = [];\n if (js_modules == null) js_modules = [];\n if (js_exports == null) js_exports = {};\n\n root._bokeh_onload_callbacks.push(callback);\n\n if (root._bokeh_is_loading > 0) {\n // Don't load bokeh if it is still initializing\n console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n return null;\n } else if (js_urls.length === 0 && js_modules.length === 0 && Object.keys(js_exports).length === 0) {\n // There is nothing to load\n run_callbacks();\n return null;\n }\n\n function on_load() {\n root._bokeh_is_loading--;\n if (root._bokeh_is_loading === 0) {\n console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n run_callbacks()\n }\n }\n window._bokeh_on_load = on_load\n\n function on_error(e) {\n const src_el = e.srcElement\n console.error(\"failed to load \" + (src_el.href || src_el.src));\n }\n\n const skip = [];\n if (window.requirejs) {\n window.requirejs.config({'packages': {}, 'paths': {}, 'shim': {}});\n root._bokeh_is_loading = css_urls.length + 0;\n } else {\n root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length + Object.keys(js_exports).length;\n }\n\n const existing_stylesheets = []\n const links = document.getElementsByTagName('link')\n for (let i = 0; i 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}\n } else if (Date.now() < root._bokeh_timeout) {\n setTimeout(run_inline_js, 100);\n } else if (!root._bokeh_failed_load) {\n console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n root._bokeh_failed_load = true;\n }\n root._bokeh_is_initializing = false;\n }\n\n function load_or_wait() {\n // Implement a backoff loop that tries to ensure we do not load multiple\n // versions of Bokeh and its dependencies at the same time.\n // In recent versions we use the root._bokeh_is_initializing flag\n // to determine whether there is an ongoing attempt to initialize\n // bokeh, however for backward compatibility we also try to ensure\n // that we do not start loading a newer (Panel>=1.0 and Bokeh>3) version\n // before older versions are fully initialized.\n if (root._bokeh_is_initializing && Date.now() > root._bokeh_timeout) {\n // If the timeout and bokeh was not successfully loaded we reset\n // everything and try loading again\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_is_initializing = false;\n root._bokeh_onload_callbacks = undefined;\n root._bokeh_is_loading = 0;\n console.log(\"Bokeh: BokehJS was loaded multiple times but one version failed to initialize.\");\n load_or_wait();\n } else if (root._bokeh_is_initializing || (typeof root._bokeh_is_initializing === \"undefined\" && root._bokeh_onload_callbacks !== undefined)) {\n setTimeout(load_or_wait, 100);\n } else {\n root._bokeh_is_initializing = true;\n root._bokeh_onload_callbacks = [];\n const bokeh_loaded = Bokeh != null && ((Bokeh.version === version && Bokeh.Panel) || (Bokeh.versions?.has(version) && Bokeh.versions.get(version)?.Panel));\n if (!reloading && !bokeh_loaded) {\n if (root.Bokeh) {\n root.Bokeh = undefined;\n }\n console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n }\n load_libs(css_urls, js_urls, js_modules, js_exports, Bokeh, function() {\n console.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n run_inline_js();\n if (Bokeh != undefined && !reloading) {\n const NewBokeh = root.Bokeh;\n if (Bokeh.versions === undefined) {\n Bokeh.versions = new Map();\n }\n if (NewBokeh.version !== Bokeh.version) {\n Bokeh[NewBokeh.version] = NewBokeh;\n Bokeh.versions.set(NewBokeh.version, NewBokeh);\n }\n root.Bokeh = Bokeh;\n }\n });\n }\n }\n // Give older versions of the autoload script a head-start to ensure\n // they initialize before we start loading newer version.\n setTimeout(load_or_wait, 100)\n}(window));" + }, + "metadata": {}, + "output_type": "display_data" + }, + { + "data": { + "application/javascript": [ + "\n", + "if ((window.PyViz === undefined) || (window.PyViz instanceof HTMLElement)) {\n", + " window.PyViz = {comms: {}, comm_status:{}, kernels:{}, receivers: {}, plot_index: []}\n", + "}\n", + "\n", + "\n", + " function JupyterCommManager() {\n", + " }\n", + "\n", + " JupyterCommManager.prototype.register_target = function(plot_id, comm_id, msg_handler) {\n", + " if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n", + " var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n", + " comm_manager.register_target(comm_id, function(comm) {\n", + " comm.on_msg(msg_handler);\n", + " });\n", + " } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n", + " window.PyViz.kernels[plot_id].registerCommTarget(comm_id, function(comm) {\n", + " comm.onMsg = msg_handler;\n", + " });\n", + " } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n", + " google.colab.kernel.comms.registerTarget(comm_id, (comm) => {\n", + " var messages = comm.messages[Symbol.asyncIterator]();\n", + " function processIteratorResult(result) {\n", + " var message = result.value;\n", + " var content = {data: message.data, comm_id};\n", + " var buffers = []\n", + " for (var buffer of message.buffers || []) {\n", + " buffers.push(new DataView(buffer))\n", + " }\n", 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= 0;\n", + " const open = () => {\n", + " if (comm.active) {\n", + " comm.open();\n", + " } else if (retries > 3) {\n", + " console.warn('Comm target never activated')\n", + " } else {\n", + " retries += 1\n", + " setTimeout(open, 500)\n", + " }\n", + " }\n", + " if (comm.active) {\n", + " comm.open();\n", + " } else {\n", + " setTimeout(open, 500)\n", + " }\n", + " if (msg_handler) {\n", + " comm.onMsg = msg_handler;\n", + " }\n", + " } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n", + " var comm_promise = google.colab.kernel.comms.open(comm_id)\n", + " comm_promise.then((comm) => {\n", + " window.PyViz.comms[comm_id] = comm;\n", + " if (msg_handler) {\n", + " var messages = comm.messages[Symbol.asyncIterator]();\n", + " function processIteratorResult(result) {\n", + " var message = result.value;\n", + " var content = {data: message.data};\n", + " var metadata = message.metadata || {comm_id};\n", + " var msg = {content, metadata}\n", + " msg_handler(msg);\n", + " return messages.next().then(processIteratorResult);\n", + " }\n", + " return messages.next().then(processIteratorResult);\n", + " }\n", + " })\n", + " var sendClosure = (data, metadata, buffers, disposeOnDone) => {\n", + " return comm_promise.then((comm) => {\n", + " comm.send(data, metadata, buffers, disposeOnDone);\n", + " });\n", + " };\n", + " var comm = {\n", + " send: sendClosure\n", + " };\n", + " }\n", + " window.PyViz.comms[comm_id] = comm;\n", + " return comm;\n", + " }\n", + " window.PyViz.comm_manager = new JupyterCommManager();\n", + " \n", + "\n", + "\n", + "var JS_MIME_TYPE = 'application/javascript';\n", + "var HTML_MIME_TYPE = 'text/html';\n", + "var EXEC_MIME_TYPE = 'application/vnd.holoviews_exec.v0+json';\n", + "var CLASS_NAME = 'output';\n", + "\n", + "/**\n", + " * Render data to the DOM node\n", + " */\n", + "function render(props, node) {\n", + " var div = document.createElement(\"div\");\n", + " var script = document.createElement(\"script\");\n", + " node.appendChild(div);\n", + " node.appendChild(script);\n", + "}\n", + "\n", + "/**\n", + " * Handle when a new output is added\n", + " */\n", + "function handle_add_output(event, handle) {\n", + " var output_area = handle.output_area;\n", + " var output = handle.output;\n", + " if ((output.data == undefined) || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n", + " return\n", + " }\n", + " var id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n", + " var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n", + " if (id !== undefined) {\n", + " var nchildren = toinsert.length;\n", + " var html_node = toinsert[nchildren-1].children[0];\n", + " html_node.innerHTML = output.data[HTML_MIME_TYPE];\n", + " var scripts = [];\n", + " var nodelist = html_node.querySelectorAll(\"script\");\n", + " for (var i in nodelist) {\n", + " if (nodelist.hasOwnProperty(i)) {\n", + " scripts.push(nodelist[i])\n", + " }\n", + " }\n", + "\n", + " scripts.forEach( function (oldScript) {\n", + " var newScript = document.createElement(\"script\");\n", + " var attrs = [];\n", + " var nodemap = oldScript.attributes;\n", + " for (var j in nodemap) {\n", + " if (nodemap.hasOwnProperty(j)) {\n", + " attrs.push(nodemap[j])\n", + " }\n", + " }\n", + " attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n", + " newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n", + " oldScript.parentNode.replaceChild(newScript, oldScript);\n", + " });\n", + " if (JS_MIME_TYPE in output.data) {\n", + " toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n", + " }\n", + " output_area._hv_plot_id = id;\n", + " if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n", + " window.PyViz.plot_index[id] = Bokeh.index[id];\n", + " } else {\n", + " window.PyViz.plot_index[id] = null;\n", + " }\n", + " } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n", + " var bk_div = document.createElement(\"div\");\n", + " bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n", + " var script_attrs = bk_div.children[0].attributes;\n", + " for (var i = 0; i < script_attrs.length; i++) {\n", + " toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n", + " }\n", + " // store reference to server id on output_area\n", + " output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n", + " }\n", + "}\n", + "\n", + "/**\n", + " * Handle when an output is cleared or removed\n", + " */\n", + "function handle_clear_output(event, handle) {\n", + " var id = handle.cell.output_area._hv_plot_id;\n", + " var server_id = handle.cell.output_area._bokeh_server_id;\n", + " if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n", + " var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n", + " if (server_id !== null) {\n", + " comm.send({event_type: 'server_delete', 'id': server_id});\n", + " return;\n", + " } else if (comm !== null) {\n", + " comm.send({event_type: 'delete', 'id': id});\n", + " }\n", + " delete PyViz.plot_index[id];\n", + " if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n", + " var doc = window.Bokeh.index[id].model.document\n", + " doc.clear();\n", + " const i = window.Bokeh.documents.indexOf(doc);\n", + " if (i > -1) {\n", + " window.Bokeh.documents.splice(i, 1);\n", + " }\n", + " }\n", + "}\n", + "\n", + "/**\n", + " * Handle kernel restart event\n", + " */\n", + "function handle_kernel_cleanup(event, handle) {\n", + " delete PyViz.comms[\"hv-extension-comm\"];\n", + " window.PyViz.plot_index = {}\n", + "}\n", + "\n", + "/**\n", + " * Handle update_display_data messages\n", + " */\n", + "function handle_update_output(event, handle) {\n", + " handle_clear_output(event, {cell: {output_area: handle.output_area}})\n", + " handle_add_output(event, handle)\n", + "}\n", + "\n", + "function register_renderer(events, OutputArea) {\n", + " function append_mime(data, metadata, element) {\n", + " // create a DOM node to render to\n", + " var toinsert = this.create_output_subarea(\n", + " metadata,\n", + " CLASS_NAME,\n", + " EXEC_MIME_TYPE\n", + " );\n", + " this.keyboard_manager.register_events(toinsert);\n", + " // Render to node\n", + " var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n", + " render(props, toinsert[0]);\n", + " element.append(toinsert);\n", + " return toinsert\n", + " }\n", + "\n", + " events.on('output_added.OutputArea', handle_add_output);\n", + " events.on('output_updated.OutputArea', handle_update_output);\n", + " events.on('clear_output.CodeCell', handle_clear_output);\n", + " events.on('delete.Cell', handle_clear_output);\n", + " events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n", + "\n", + " OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n", + " safe: true,\n", + 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toinsert.length;\n", + " var html_node = toinsert[nchildren-1].children[0];\n", + " html_node.innerHTML = output.data[HTML_MIME_TYPE];\n", + " var scripts = [];\n", + " var nodelist = html_node.querySelectorAll(\"script\");\n", + " for (var i in nodelist) {\n", + " if (nodelist.hasOwnProperty(i)) {\n", + " scripts.push(nodelist[i])\n", + " }\n", + " }\n", + "\n", + " scripts.forEach( function (oldScript) {\n", + " var newScript = document.createElement(\"script\");\n", + " var attrs = [];\n", + " var nodemap = oldScript.attributes;\n", + " for (var j in nodemap) {\n", + " if (nodemap.hasOwnProperty(j)) {\n", + " attrs.push(nodemap[j])\n", + " }\n", + " }\n", + " attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n", + " newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n", + " oldScript.parentNode.replaceChild(newScript, oldScript);\n", + " });\n", + " if (JS_MIME_TYPE in output.data) {\n", + " toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n", + " }\n", + " output_area._hv_plot_id = id;\n", + " if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n", + " window.PyViz.plot_index[id] = Bokeh.index[id];\n", + " } else {\n", + " window.PyViz.plot_index[id] = null;\n", + " }\n", + " } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n", + " var bk_div = document.createElement(\"div\");\n", + " bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n", + " var script_attrs = bk_div.children[0].attributes;\n", + " for (var i = 0; i < script_attrs.length; i++) {\n", + " toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n", + " }\n", + " // store reference to server id on output_area\n", + " output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n", + " }\n", + "}\n", + "\n", + "/**\n", + " * Handle when an output is cleared or removed\n", + " */\n", + 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event\n", + " */\n", + "function handle_kernel_cleanup(event, handle) {\n", + " delete PyViz.comms[\"hv-extension-comm\"];\n", + " window.PyViz.plot_index = {}\n", + "}\n", + "\n", + "/**\n", + " * Handle update_display_data messages\n", + " */\n", + "function handle_update_output(event, handle) {\n", + " handle_clear_output(event, {cell: {output_area: handle.output_area}})\n", + " handle_add_output(event, handle)\n", + "}\n", + "\n", + "function register_renderer(events, OutputArea) {\n", + " function append_mime(data, metadata, element) {\n", + " // create a DOM node to render to\n", + " var toinsert = this.create_output_subarea(\n", + " metadata,\n", + " CLASS_NAME,\n", + " EXEC_MIME_TYPE\n", + " );\n", + " this.keyboard_manager.register_events(toinsert);\n", + " // Render to node\n", + " var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n", + " render(props, toinsert[0]);\n", + " element.append(toinsert);\n", + " return toinsert\n", + " }\n", + "\n", + " events.on('output_added.OutputArea', handle_add_output);\n", + " events.on('output_updated.OutputArea', handle_update_output);\n", + " events.on('clear_output.CodeCell', handle_clear_output);\n", + " events.on('delete.Cell', handle_clear_output);\n", + " events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n", + "\n", + " OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n", + " safe: true,\n", + " index: 0\n", + " });\n", + "}\n", + "\n", + "if (window.Jupyter !== undefined) {\n", + " try {\n", + " var events = require('base/js/events');\n", + " var OutputArea = require('notebook/js/outputarea').OutputArea;\n", + " if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n", + " register_renderer(events, OutputArea);\n", + " }\n", + " } catch(err) {\n", + " }\n", + "}\n" + ], + "application/vnd.holoviews_load.v0+json": "\nif ((window.PyViz === undefined) || (window.PyViz instanceof HTMLElement)) {\n window.PyViz = {comms: {}, comm_status:{}, 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comm.open();\n } else if (retries > 3) {\n console.warn('Comm target never activated')\n } else {\n retries += 1\n setTimeout(open, 500)\n }\n }\n if (comm.active) {\n comm.open();\n } else {\n setTimeout(open, 500)\n }\n if (msg_handler) {\n comm.onMsg = msg_handler;\n }\n } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n var comm_promise = google.colab.kernel.comms.open(comm_id)\n comm_promise.then((comm) => {\n window.PyViz.comms[comm_id] = comm;\n if (msg_handler) {\n var messages = comm.messages[Symbol.asyncIterator]();\n function processIteratorResult(result) {\n var message = result.value;\n var content = {data: message.data};\n var metadata = message.metadata || {comm_id};\n var msg = {content, metadata}\n msg_handler(msg);\n return messages.next().then(processIteratorResult);\n }\n return messages.next().then(processIteratorResult);\n }\n })\n var sendClosure = (data, metadata, buffers, disposeOnDone) => {\n return comm_promise.then((comm) => {\n comm.send(data, metadata, buffers, disposeOnDone);\n });\n };\n var comm = {\n send: sendClosure\n };\n }\n window.PyViz.comms[comm_id] = comm;\n return comm;\n }\n window.PyViz.comm_manager = new JupyterCommManager();\n \n\n\nvar JS_MIME_TYPE = 'application/javascript';\nvar HTML_MIME_TYPE = 'text/html';\nvar EXEC_MIME_TYPE = 'application/vnd.holoviews_exec.v0+json';\nvar CLASS_NAME = 'output';\n\n/**\n * Render data to the DOM node\n */\nfunction render(props, node) {\n var div = document.createElement(\"div\");\n var script = document.createElement(\"script\");\n node.appendChild(div);\n node.appendChild(script);\n}\n\n/**\n * Handle when a new output is added\n */\nfunction handle_add_output(event, handle) {\n var output_area = handle.output_area;\n var output = handle.output;\n if ((output.data == undefined) || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n return\n }\n var id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n if (id !== undefined) {\n var nchildren = toinsert.length;\n var html_node = toinsert[nchildren-1].children[0];\n html_node.innerHTML = output.data[HTML_MIME_TYPE];\n var scripts = [];\n var nodelist = html_node.querySelectorAll(\"script\");\n for (var i in nodelist) {\n if (nodelist.hasOwnProperty(i)) {\n scripts.push(nodelist[i])\n }\n }\n\n scripts.forEach( function (oldScript) {\n var newScript = document.createElement(\"script\");\n var attrs = [];\n var nodemap = oldScript.attributes;\n for (var j in nodemap) {\n if (nodemap.hasOwnProperty(j)) {\n attrs.push(nodemap[j])\n }\n }\n attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n oldScript.parentNode.replaceChild(newScript, oldScript);\n });\n if (JS_MIME_TYPE in output.data) {\n toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n }\n output_area._hv_plot_id = id;\n if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n window.PyViz.plot_index[id] = Bokeh.index[id];\n } else {\n window.PyViz.plot_index[id] = null;\n }\n } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n var bk_div = document.createElement(\"div\");\n bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n var script_attrs = bk_div.children[0].attributes;\n for (var i = 0; i < script_attrs.length; i++) {\n toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n }\n // store reference to server id on output_area\n output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n }\n}\n\n/**\n * Handle when an output is cleared or removed\n */\nfunction handle_clear_output(event, handle) {\n var id = handle.cell.output_area._hv_plot_id;\n var server_id = handle.cell.output_area._bokeh_server_id;\n if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n if (server_id !== null) {\n comm.send({event_type: 'server_delete', 'id': server_id});\n return;\n } else if (comm !== null) {\n comm.send({event_type: 'delete', 'id': id});\n }\n delete PyViz.plot_index[id];\n if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n var doc = window.Bokeh.index[id].model.document\n doc.clear();\n const i = window.Bokeh.documents.indexOf(doc);\n if (i > -1) {\n window.Bokeh.documents.splice(i, 1);\n }\n }\n}\n\n/**\n * Handle kernel restart event\n */\nfunction handle_kernel_cleanup(event, handle) {\n delete PyViz.comms[\"hv-extension-comm\"];\n window.PyViz.plot_index = {}\n}\n\n/**\n * Handle update_display_data messages\n */\nfunction handle_update_output(event, handle) {\n handle_clear_output(event, {cell: {output_area: handle.output_area}})\n handle_add_output(event, handle)\n}\n\nfunction register_renderer(events, OutputArea) {\n function append_mime(data, metadata, element) {\n // create a DOM node to render to\n var toinsert = this.create_output_subarea(\n metadata,\n CLASS_NAME,\n EXEC_MIME_TYPE\n );\n this.keyboard_manager.register_events(toinsert);\n // Render to node\n var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n render(props, toinsert[0]);\n element.append(toinsert);\n return toinsert\n }\n\n events.on('output_added.OutputArea', handle_add_output);\n events.on('output_updated.OutputArea', handle_update_output);\n events.on('clear_output.CodeCell', handle_clear_output);\n events.on('delete.Cell', handle_clear_output);\n events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n\n OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n safe: true,\n index: 0\n });\n}\n\nif (window.Jupyter !== undefined) {\n try {\n var events = require('base/js/events');\n var OutputArea = require('notebook/js/outputarea').OutputArea;\n if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n register_renderer(events, OutputArea);\n }\n } catch(err) {\n }\n}\n" + }, + "metadata": {}, + "output_type": "display_data" + }, + { + "data": { + "text/html": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + }, + { + "data": { + "application/javascript": [ + "(function(root) {\n", + " function now() {\n", + " return new Date();\n", + " }\n", + "\n", + " const force = false;\n", + " const version = '3.9.0'.replace('rc', '-rc.').replace('.dev', '-dev.');\n", + " const reloading = true;\n", + " const Bokeh = root.Bokeh;\n", + " const BK_RE = /^https:\\/\\/cdn\\.bokeh\\.org\\/bokeh\\/(release|dev)\\/bokeh-/;\n", + " const PN_RE = /^https:\\/\\/cdn\\.holoviz\\.org\\/panel\\/[^/]+\\/dist\\/panel/i;\n", + "\n", + " // Set a timeout for this load but only if we are not already initializing\n", + " if (typeof (root._bokeh_timeout) === \"undefined\" || (force || !root._bokeh_is_initializing)) {\n", + " root._bokeh_timeout = Date.now() + 5000;\n", + " root._bokeh_failed_load = false;\n", + " }\n", + "\n", + " function run_callbacks() {\n", + " try {\n", + " root._bokeh_onload_callbacks.forEach(function(callback) {\n", + " if (callback != null)\n", + " callback();\n", + " });\n", + " } finally {\n", + " delete root._bokeh_onload_callbacks;\n", + " }\n", + " console.debug(\"Bokeh: all callbacks have finished\");\n", + " }\n", + "\n", + " function load_libs(css_urls, js_urls, js_modules, js_exports, Bokeh, callback) {\n", + " if (css_urls == null) css_urls = [];\n", + " if (js_urls == null) js_urls = [];\n", + " if (js_modules == null) js_modules = [];\n", + " if (js_exports == null) js_exports = {};\n", + "\n", + " root._bokeh_onload_callbacks.push(callback);\n", + "\n", + " if (root._bokeh_is_loading > 0) {\n", + " // Don't load bokeh if it is still initializing\n", + " console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n", + " return null;\n", + " } else if (js_urls.length === 0 && js_modules.length === 0 && Object.keys(js_exports).length === 0) {\n", + " // There is nothing to load\n", + " run_callbacks();\n", + " return null;\n", + " }\n", + "\n", + " function on_load() {\n", + " root._bokeh_is_loading--;\n", + " if (root._bokeh_is_loading === 0) {\n", + " console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n", + " run_callbacks()\n", + " }\n", + " }\n", + " window._bokeh_on_load = on_load\n", + "\n", + " function on_error(e) {\n", + " const src_el = e.srcElement\n", + " console.error(\"failed to load \" + (src_el.href || src_el.src));\n", + " }\n", + "\n", + " const skip = [];\n", + " if (window.requirejs) {\n", + " window.requirejs.config({'packages': {}, 'paths': {}, 'shim': {}});\n", + " root._bokeh_is_loading = css_urls.length + 0;\n", + " } else {\n", + " root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length + Object.keys(js_exports).length;\n", + " }\n", + "\n", + " const existing_stylesheets = []\n", + " const links = document.getElementsByTagName('link')\n", + " for (let i = 0; i < links.length; i++) {\n", + " const link = links[i]\n", + " if (link.href != null) {\n", + " existing_stylesheets.push(link.href)\n", + " }\n", + " }\n", + " for (let i = 0; i < css_urls.length; i++) {\n", + " const url = css_urls[i];\n", + " const escaped = encodeURI(url)\n", + " if (existing_stylesheets.indexOf(escaped) !== -1) {\n", + " on_load()\n", + " continue;\n", + " }\n", + " const element = document.createElement(\"link\");\n", + " element.onload = on_load;\n", + " element.onerror = on_error;\n", + " element.rel = \"stylesheet\";\n", + " element.type = \"text/css\";\n", + " element.href = url;\n", + " console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n", + " document.body.appendChild(element);\n", + " } var existing_scripts = []\n", + " const scripts = document.getElementsByTagName('script')\n", + " for (let i = 0; i < scripts.length; i++) {\n", + " var script = scripts[i]\n", + " if (script.src != null) {\n", + " existing_scripts.push(script.src)\n", + " }\n", + " }\n", + " for (let i = 0; i < js_urls.length; i++) {\n", + " const url = js_urls[i];\n", + " const escaped = encodeURI(url)\n", + " const shouldSkip = skip.includes(escaped) || existing_scripts.includes(escaped)\n", + " const isBokehOrPanel = BK_RE.test(escaped) || PN_RE.test(escaped)\n", + " const missingOrBroken = Bokeh == null || Bokeh.Panel == null || (Bokeh.version != version && !Bokeh.versions?.has(version)) || Bokeh.versions?.get(version)?.Panel == null;\n", + " if (shouldSkip && !(isBokehOrPanel && missingOrBroken)) {\n", + " if (!window.requirejs) {\n", + " on_load();\n", + " }\n", + " continue;\n", + " }\n", + " const element = document.createElement('script');\n", + " element.onload = on_load;\n", + " element.onerror = on_error;\n", + " element.async = false;\n", + " element.src = url;\n", + " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n", + " document.head.appendChild(element);\n", + " }\n", + " for (let i = 0; i < js_modules.length; i++) {\n", + " const url = js_modules[i];\n", + " const escaped = encodeURI(url)\n", + " if (skip.indexOf(escaped) !== -1 || existing_scripts.indexOf(escaped) !== -1) {\n", + " if (!window.requirejs) {\n", + " on_load();\n", + " }\n", + " continue;\n", + " }\n", + " var element = document.createElement('script');\n", + " element.onload = on_load;\n", + " element.onerror = on_error;\n", + " element.async = false;\n", + " element.src = url;\n", + " element.type = \"module\";\n", + " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n", + " document.head.appendChild(element);\n", + " }\n", + " for (const name in js_exports) {\n", + " const url = js_exports[name];\n", + " const escaped = encodeURI(url)\n", + " if (skip.indexOf(escaped) >= 0 || root[name] != null) {\n", + " if (!window.requirejs) {\n", + " on_load();\n", + " }\n", + " continue;\n", + " }\n", + " var element = document.createElement('script');\n", + " element.onerror = on_error;\n", + " element.async = false;\n", + " element.type = \"module\";\n", + " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n", + " element.textContent = `\n", + " import ${name} from \"${url}\"\n", + " window.${name} = ${name}\n", + " window._bokeh_on_load()\n", + " `\n", + " document.head.appendChild(element);\n", + " }\n", + " if (!js_urls.length && !js_modules.length) {\n", + " on_load()\n", + " }\n", + " };\n", + "\n", + " function inject_raw_css(css) {\n", + " const element = document.createElement(\"style\");\n", + " element.appendChild(document.createTextNode(css));\n", + " document.body.appendChild(element);\n", + " }\n", + "\n", + " const js_urls = [\"https://cdn.holoviz.org/panel/1.8.10/dist/bundled/reactiveesm/es-module-shims@^1.10.0/dist/es-module-shims.min.js\"];\n", + " const js_modules = [];\n", + " const js_exports = {};\n", + " const css_urls = [];\n", + " const inline_js = [ function(Bokeh) {\n", + " Bokeh.set_log_level(\"info\");\n", + " },\n", + "function(Bokeh) {} // ensure no trailing comma for IE\n", + " ];\n", + "\n", + " function run_inline_js() {\n", + " if ((root.Bokeh !== undefined) || (force === true)) {\n", + " for (let i = 0; i < inline_js.length; i++) {\n", + " try {\n", + " inline_js[i].call(root, root.Bokeh);\n", + " } catch(e) {\n", + " if (!reloading) {\n", + " throw e;\n", + " }\n", + " }\n", + " }\n", + " } else if (Date.now() < root._bokeh_timeout) {\n", + " setTimeout(run_inline_js, 100);\n", + " } else if (!root._bokeh_failed_load) {\n", + " console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n", + " root._bokeh_failed_load = true;\n", + " }\n", + " root._bokeh_is_initializing = false;\n", + " }\n", + "\n", + " function load_or_wait() {\n", + " // Implement a backoff loop that tries to ensure we do not load multiple\n", + " // versions of Bokeh and its dependencies at the same time.\n", + " // In recent versions we use the root._bokeh_is_initializing flag\n", + " // to determine whether there is an ongoing attempt to initialize\n", + " // bokeh, however for backward compatibility we also try to ensure\n", + " // that we do not start loading a newer (Panel>=1.0 and Bokeh>3) version\n", + " // before older versions are fully initialized.\n", + " if (root._bokeh_is_initializing && Date.now() > root._bokeh_timeout) {\n", + " // If the timeout and bokeh was not successfully loaded we reset\n", + " // everything and try loading again\n", + " root._bokeh_timeout = Date.now() + 5000;\n", + " root._bokeh_is_initializing = false;\n", + " root._bokeh_onload_callbacks = undefined;\n", + " root._bokeh_is_loading = 0;\n", + " console.log(\"Bokeh: BokehJS was loaded multiple times but one version failed to initialize.\");\n", + " load_or_wait();\n", + " } else if (root._bokeh_is_initializing || (typeof root._bokeh_is_initializing === \"undefined\" && root._bokeh_onload_callbacks !== undefined)) {\n", + " setTimeout(load_or_wait, 100);\n", + " } else {\n", + " root._bokeh_is_initializing = true;\n", + " root._bokeh_onload_callbacks = [];\n", + " const bokeh_loaded = Bokeh != null && ((Bokeh.version === version && Bokeh.Panel) || (Bokeh.versions?.has(version) && Bokeh.versions.get(version)?.Panel));\n", + " if (!reloading && !bokeh_loaded) {\n", + " if (root.Bokeh) {\n", + " root.Bokeh = undefined;\n", + " }\n", + " console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n", + " }\n", + " load_libs(css_urls, js_urls, js_modules, js_exports, Bokeh, function() {\n", + " console.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n", + " run_inline_js();\n", + " if (Bokeh != undefined && !reloading) {\n", + " const NewBokeh = root.Bokeh;\n", + " if (Bokeh.versions === undefined) {\n", + " Bokeh.versions = new Map();\n", + " }\n", + " if (NewBokeh.version !== Bokeh.version) {\n", + " Bokeh[NewBokeh.version] = NewBokeh;\n", + " Bokeh.versions.set(NewBokeh.version, NewBokeh);\n", + " }\n", + " root.Bokeh = Bokeh;\n", + " }\n", + " });\n", + " }\n", + " }\n", + " // Give older versions of the autoload script a head-start to ensure\n", + " // they initialize before we start loading newer version.\n", + " setTimeout(load_or_wait, 100)\n", + "}(window));" + ], + "application/vnd.holoviews_load.v0+json": "(function(root) {\n function now() {\n return new Date();\n }\n\n const force = false;\n const version = '3.9.0'.replace('rc', '-rc.').replace('.dev', '-dev.');\n const reloading = true;\n const Bokeh = root.Bokeh;\n const BK_RE = /^https:\\/\\/cdn\\.bokeh\\.org\\/bokeh\\/(release|dev)\\/bokeh-/;\n const PN_RE = /^https:\\/\\/cdn\\.holoviz\\.org\\/panel\\/[^/]+\\/dist\\/panel/i;\n\n // Set a timeout for this load but only if we are not already initializing\n if (typeof (root._bokeh_timeout) === \"undefined\" || (force || !root._bokeh_is_initializing)) {\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_failed_load = false;\n }\n\n function run_callbacks() {\n try {\n root._bokeh_onload_callbacks.forEach(function(callback) {\n if (callback != null)\n callback();\n });\n } finally {\n delete root._bokeh_onload_callbacks;\n }\n console.debug(\"Bokeh: all callbacks have finished\");\n }\n\n function load_libs(css_urls, js_urls, js_modules, js_exports, Bokeh, callback) {\n if (css_urls == null) css_urls = [];\n if (js_urls == null) js_urls = [];\n if (js_modules == null) js_modules = [];\n if (js_exports == null) js_exports = {};\n\n root._bokeh_onload_callbacks.push(callback);\n\n if (root._bokeh_is_loading > 0) {\n // Don't load bokeh if it is still initializing\n console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n return null;\n } else if (js_urls.length === 0 && js_modules.length === 0 && Object.keys(js_exports).length === 0) {\n // There is nothing to load\n run_callbacks();\n return null;\n }\n\n function on_load() {\n root._bokeh_is_loading--;\n if (root._bokeh_is_loading === 0) {\n console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n run_callbacks()\n }\n }\n window._bokeh_on_load = on_load\n\n function on_error(e) {\n const src_el = e.srcElement\n console.error(\"failed to load \" + (src_el.href || src_el.src));\n }\n\n const skip = [];\n if (window.requirejs) {\n window.requirejs.config({'packages': {}, 'paths': {}, 'shim': {}});\n root._bokeh_is_loading = css_urls.length + 0;\n } else {\n root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length + Object.keys(js_exports).length;\n }\n\n const existing_stylesheets = []\n const links = document.getElementsByTagName('link')\n for (let i = 0; i < links.length; i++) {\n const link = links[i]\n if (link.href != null) {\n existing_stylesheets.push(link.href)\n }\n }\n for (let i = 0; i < css_urls.length; i++) {\n const url = css_urls[i];\n const escaped = encodeURI(url)\n if (existing_stylesheets.indexOf(escaped) !== -1) {\n on_load()\n continue;\n }\n const element = document.createElement(\"link\");\n element.onload = on_load;\n element.onerror = on_error;\n element.rel = \"stylesheet\";\n element.type = \"text/css\";\n element.href = url;\n console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n document.body.appendChild(element);\n } var existing_scripts = []\n const scripts = document.getElementsByTagName('script')\n for (let i = 0; i < scripts.length; i++) {\n var script = scripts[i]\n if (script.src != null) {\n existing_scripts.push(script.src)\n }\n }\n for (let i = 0; i < js_urls.length; i++) {\n const url = js_urls[i];\n const escaped = encodeURI(url)\n const shouldSkip = skip.includes(escaped) || existing_scripts.includes(escaped)\n const isBokehOrPanel = BK_RE.test(escaped) || PN_RE.test(escaped)\n const missingOrBroken = Bokeh == null || Bokeh.Panel == null || (Bokeh.version != version && !Bokeh.versions?.has(version)) || Bokeh.versions?.get(version)?.Panel == null;\n if (shouldSkip && !(isBokehOrPanel && missingOrBroken)) {\n if (!window.requirejs) {\n on_load();\n }\n continue;\n }\n const element = document.createElement('script');\n element.onload = on_load;\n element.onerror = on_error;\n element.async = false;\n element.src = url;\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.head.appendChild(element);\n }\n for (let i = 0; i < js_modules.length; i++) {\n const url = js_modules[i];\n const escaped = encodeURI(url)\n if (skip.indexOf(escaped) !== -1 || existing_scripts.indexOf(escaped) !== -1) {\n if (!window.requirejs) {\n on_load();\n }\n continue;\n }\n var element = document.createElement('script');\n element.onload = on_load;\n element.onerror = on_error;\n element.async = false;\n element.src = url;\n element.type = \"module\";\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.head.appendChild(element);\n }\n for (const name in js_exports) {\n const url = js_exports[name];\n const escaped = encodeURI(url)\n if (skip.indexOf(escaped) >= 0 || root[name] != null) {\n if (!window.requirejs) {\n on_load();\n }\n continue;\n }\n var element = document.createElement('script');\n element.onerror = on_error;\n element.async = false;\n element.type = \"module\";\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n element.textContent = `\n import ${name} from \"${url}\"\n window.${name} = ${name}\n window._bokeh_on_load()\n `\n document.head.appendChild(element);\n }\n if (!js_urls.length && !js_modules.length) {\n on_load()\n }\n };\n\n function inject_raw_css(css) {\n const element = document.createElement(\"style\");\n element.appendChild(document.createTextNode(css));\n document.body.appendChild(element);\n }\n\n const js_urls = [\"https://cdn.holoviz.org/panel/1.8.10/dist/bundled/reactiveesm/es-module-shims@^1.10.0/dist/es-module-shims.min.js\"];\n const js_modules = [];\n const js_exports = {};\n const css_urls = [];\n const inline_js = [ function(Bokeh) {\n Bokeh.set_log_level(\"info\");\n },\nfunction(Bokeh) {} // ensure no trailing comma for IE\n ];\n\n function run_inline_js() {\n if ((root.Bokeh !== undefined) || (force === true)) {\n for (let i = 0; i < inline_js.length; i++) {\n try {\n inline_js[i].call(root, root.Bokeh);\n } catch(e) {\n if (!reloading) {\n throw e;\n }\n }\n }\n } else if (Date.now() < root._bokeh_timeout) {\n setTimeout(run_inline_js, 100);\n } else if (!root._bokeh_failed_load) {\n console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n root._bokeh_failed_load = true;\n }\n root._bokeh_is_initializing = false;\n }\n\n function load_or_wait() {\n // Implement a backoff loop that tries to ensure we do not load multiple\n // versions of Bokeh and its dependencies at the same time.\n // In recent versions we use the root._bokeh_is_initializing flag\n // to determine whether there is an ongoing attempt 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+       "    platform:     Model\n",
+       "    references:   http://www.esrl.noaa.gov/psd/data/gridded/data.ncep.reanaly...
" + ], + "text/plain": [ + " Size: 31MB\n", + "Dimensions: (time: 2920, n_face: 1325)\n", + "Coordinates:\n", + " * time (time) datetime64[ns] 23kB 2013-01-01 ... 2014-12-31T18:00:00\n", + "Dimensions without coordinates: n_face\n", + "Data variables:\n", + " air (time, n_face) float64 31MB 241.2 242.5 243.5 ... 296.5 296.2 295.7\n", + "Attributes:\n", + " Conventions: COARDS\n", + " title: 4x daily NMC reanalysis (1948)\n", + " description: Data is from NMC initialized reanalysis\\n(4x/day). These a...\n", + " platform: Model\n", + " references: http://www.esrl.noaa.gov/psd/data/gridded/data.ncep.reanaly..." + ] + }, + "execution_count": 7, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "uxds = ux.UxDataset.from_structured(ds_air_temp)\n", "uxds" @@ -135,10 +6042,35 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 8, "id": "8037fd0309774356", - "metadata": {}, - "outputs": [], + "metadata": { + "execution": { + "iopub.execute_input": "2026-07-13T21:58:50.542702Z", + "iopub.status.busy": "2026-07-13T21:58:50.542568Z", + "iopub.status.idle": "2026-07-13T21:58:53.189672Z", + "shell.execute_reply": "2026-07-13T21:58:53.189080Z" + } + }, + "outputs": [ + { + "data": { + "text/html": [ + "" + ], + "text/plain": [ + ":Overlay\n", + " .Image.I :Image [Longitude,Latitude] (Longitude_Latitude air)\n", + " .Coastline.I :Feature [Longitude,Latitude]" + ] + }, + "execution_count": 8, + "metadata": { + "application/vnd.holoviews_exec.v0+json": {} + }, + "output_type": "execute_result" + } + ], "source": [ "uxds[\"air\"][0].plot(\n", " title=\"Structured Grid with Data loaded using UXarray\",\n", @@ -148,6 +6080,1852 @@ ")" ] }, + { + "cell_type": "markdown", + "id": "18e583bd", + "metadata": {}, + "source": [ + "## Pairing a Structured Grid with an Existing Dataset\n", + "\n", + "The examples above build the ``Grid`` and the data together. A common workflow,\n", + "though, is to keep an *interface layer* that reads either already-unstructured\n", + "data (e.g. CAM-SE) or structured data (e.g. a regular lat/lon dataset) and\n", + "standardizes both to UXarray, so everything downstream operates on unstructured\n", + "data uniformly.\n", + "\n", + "For the structured case, build a ``Grid`` from the longitude/latitude\n", + "coordinates and then attach an existing ``xarray.Dataset`` to it with\n", + "``ux.UxDataset.from_xarray``. UXarray records the structured source dimensions\n", + "on the grid, so the ``(lon, lat)`` data variables are automatically flattened\n", + "onto ``n_face``." + ] + }, + { + "cell_type": "code", + "execution_count": 9, + "id": "29a4d6e6", + "metadata": { + "execution": { + "iopub.execute_input": "2026-07-13T21:58:53.191104Z", + "iopub.status.busy": "2026-07-13T21:58:53.190985Z", + "iopub.status.idle": "2026-07-13T21:58:53.230695Z", + "shell.execute_reply": "2026-07-13T21:58:53.230134Z" + } + }, + "outputs": [ + { + "data": { + "text/html": [ + "
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<xarray.UxDataset> Size: 31MB\n",
+       "Dimensions:  (time: 2920, n_face: 1325)\n",
+       "Coordinates:\n",
+       "  * time     (time) datetime64[ns] 23kB 2013-01-01 ... 2014-12-31T18:00:00\n",
+       "  * n_face   (n_face) object 11kB MultiIndex\n",
+       "  * lat      (n_face) float32 5kB 75.0 75.0 75.0 75.0 ... 15.0 15.0 15.0 15.0\n",
+       "  * lon      (n_face) float32 5kB 200.0 202.5 205.0 207.5 ... 325.0 327.5 330.0\n",
+       "Data variables:\n",
+       "    air      (time, n_face) float64 31MB 241.2 242.5 243.5 ... 296.5 296.2 295.7\n",
+       "Attributes:\n",
+       "    Conventions:  COARDS\n",
+       "    title:        4x daily NMC reanalysis (1948)\n",
+       "    description:  Data is from NMC initialized reanalysis\\n(4x/day).  These a...\n",
+       "    platform:     Model\n",
+       "    references:   http://www.esrl.noaa.gov/psd/data/gridded/data.ncep.reanaly...
" + ], + "text/plain": [ + " Size: 31MB\n", + "Dimensions: (time: 2920, n_face: 1325)\n", + "Coordinates:\n", + " * time (time) datetime64[ns] 23kB 2013-01-01 ... 2014-12-31T18:00:00\n", + " * n_face (n_face) object 11kB MultiIndex\n", + " * lat (n_face) float32 5kB 75.0 75.0 75.0 75.0 ... 15.0 15.0 15.0 15.0\n", + " * lon (n_face) float32 5kB 200.0 202.5 205.0 207.5 ... 325.0 327.5 330.0\n", + "Data variables:\n", + " air (time, n_face) float64 31MB 241.2 242.5 243.5 ... 296.5 296.2 295.7\n", + "Attributes:\n", + " Conventions: COARDS\n", + " title: 4x daily NMC reanalysis (1948)\n", + " description: Data is from NMC initialized reanalysis\\n(4x/day). These a...\n", + " platform: Model\n", + " references: http://www.esrl.noaa.gov/psd/data/gridded/data.ncep.reanaly..." + ] + }, + "execution_count": 9, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "# Build the grid from the coordinates, then attach the existing Dataset.\n", + "uxgrid = ux.Grid.from_structured(lon=ds_air_temp.lon, lat=ds_air_temp.lat)\n", + "uxds = ux.UxDataset.from_xarray(ds_air_temp, uxgrid=uxgrid)\n", + "uxds" + ] + }, + { + "cell_type": "markdown", + "id": "fd230d36", + "metadata": {}, + "source": [ + "The ``air`` variable is now mapped onto ``n_face``, so it plots and subsets like\n", + "any other unstructured variable. Below, we take a regional subset with a\n", + "bounding circle and plot it." + ] + }, + { + "cell_type": "code", + "execution_count": 10, + "id": "ea421f23", + "metadata": { + "execution": { + "iopub.execute_input": "2026-07-13T21:58:53.232200Z", + "iopub.status.busy": "2026-07-13T21:58:53.232080Z", + "iopub.status.idle": "2026-07-13T21:58:55.590424Z", + "shell.execute_reply": "2026-07-13T21:58:55.589853Z" + } + }, + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "OMP: Info #276: omp_set_nested routine deprecated, please use omp_set_max_active_levels instead.\n" + ] + }, + { + "data": { + "text/html": [ + "" + ], + "text/plain": [ + ":Overlay\n", + " .Image.I :Image [Longitude,Latitude] (Longitude_Latitude air)\n", + " .Coastline.I :Feature [Longitude,Latitude]" + ] + }, + "execution_count": 10, + "metadata": { + "application/vnd.holoviews_exec.v0+json": {} + }, + "output_type": "execute_result" + } + ], + "source": [ + "# Regional subset around the central United States, enabled by the n_face mapping.\n", + "regional = uxds[\"air\"][0].subset.bounding_circle((-100.0, 40.0), 15)\n", + "\n", + "regional.plot(\n", + " title=\"Regional Subset of a Structured Grid (via bounding_circle)\",\n", + " backend=\"matplotlib\",\n", + " width=500,\n", + " coastline=True,\n", + ")" + ] + }, { "cell_type": "markdown", "id": "3badcc09659920b5", @@ -179,9 +7957,16 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 11, "id": "b6b872c3341c3eba", - "metadata": {}, + "metadata": { + "execution": { + "iopub.execute_input": "2026-07-13T21:58:55.592079Z", + "iopub.status.busy": "2026-07-13T21:58:55.591857Z", + "iopub.status.idle": "2026-07-13T21:58:55.814721Z", + "shell.execute_reply": "2026-07-13T21:58:55.814151Z" + } + }, "outputs": [], "source": [ "uxds = ux.UxDataset.from_structured(ds_ersstv5)" @@ -191,14 +7976,41 @@ "cell_type": "markdown", "id": "556a04ca5c799cbb", "metadata": {}, - "source": "Below is a plot of Sea Surface Temperature on a structured grid." + "source": [ + "Below is a plot of Sea Surface Temperature on a structured grid." + ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 12, "id": "dd07e0e5848d5095", - "metadata": {}, - "outputs": [], + "metadata": { + "execution": { + "iopub.execute_input": "2026-07-13T21:58:55.816388Z", + "iopub.status.busy": "2026-07-13T21:58:55.816269Z", + "iopub.status.idle": "2026-07-13T21:58:58.229347Z", + "shell.execute_reply": "2026-07-13T21:58:58.228930Z" + } + }, + "outputs": [ + { + "data": { + "text/html": [ + "" + ], + "text/plain": [ + ":Overlay\n", + " .Image.I :Image [Longitude,Latitude] (Longitude_Latitude sst)\n", + " .Coastline.I :Feature [Longitude,Latitude]" + ] + }, + "execution_count": 12, + "metadata": { + "application/vnd.holoviews_exec.v0+json": {} + }, + "output_type": "execute_result" + } + ], "source": [ "uxds[\"sst\"][0].plot(\n", " projection=ccrs.Orthographic(central_latitude=60),\n", @@ -213,14 +8025,41 @@ "cell_type": "markdown", "id": "fd7779c434574e45", "metadata": {}, - "source": "If we expose the grid structure, we can observe the singularity at the poles." + "source": [ + "If we expose the grid structure, we can observe the singularity at the poles." + ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 13, "id": "f9ded6909c6adc18", - "metadata": {}, - "outputs": [], + "metadata": { + "execution": { + "iopub.execute_input": "2026-07-13T21:58:58.231163Z", + "iopub.status.busy": "2026-07-13T21:58:58.231037Z", + "iopub.status.idle": "2026-07-13T21:59:06.012901Z", + "shell.execute_reply": "2026-07-13T21:59:06.010531Z" + } + }, + "outputs": [ + { + "data": { + "text/html": [ + "" + ], + "text/plain": [ + ":Overlay\n", + " .Path.I :Path [Longitude,Latitude]\n", + " .Coastline.I :Feature [Longitude,Latitude]" + ] + }, + "execution_count": 13, + "metadata": { + "application/vnd.holoviews_exec.v0+json": {} + }, + "output_type": "execute_result" + } + ], "source": [ "uxds.uxgrid.plot(\n", " projection=ccrs.Orthographic(central_latitude=60),\n", @@ -242,14 +8081,14 @@ "language_info": { "codemirror_mode": { "name": "ipython", - "version": 2 + "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "2.7.6" + "version": "3.11.13" } }, "nbformat": 4, diff --git a/test/io/test_structured.py b/test/io/test_structured.py index f53e3241f..b58b9818a 100644 --- a/test/io/test_structured.py +++ b/test/io/test_structured.py @@ -34,3 +34,40 @@ def test_read_structured_uxds_from_ds(ds_name): assert "lat" not in uxds.dims assert uxds.uxgrid.validate() + + +@pytest.mark.parametrize("ds_name", ["air_temperature"]) +def test_from_xarray_with_grid_from_latlon(ds_name): + """Regression test for GH #1410: a Grid built via ``from_structured(lon=, lat=)`` + must record its source dimensions so ``UxDataset.from_xarray`` flattens the + structured (lon, lat) data variables onto ``n_face``.""" + ds = xr.tutorial.open_dataset(ds_name) + + uxgrid = ux.Grid.from_structured(lon=ds.lon, lat=ds.lat) + + # The grid must carry the structured spec and the source-dim mapping. + assert uxgrid.source_grid_spec == "Structured" + assert uxgrid._source_dims_dict == {"n_face": (ds.lon.dims[0], ds.lat.dims[0])} + + uxds = ux.UxDataset.from_xarray(ds, uxgrid=uxgrid) + + # Data must now be mapped onto n_face, not left on lon/lat. + assert "n_face" in uxds.dims + assert "lon" not in uxds.dims + assert "lat" not in uxds.dims + assert uxds["air"].sizes["n_face"] == ds.sizes["lon"] * ds.sizes["lat"] + + # The flatten must preserve data order: each face value must equal the + # original (lat, lon) cell value at that face. n_face is stacked as + # (lat, lon) C-order, so face k corresponds to (k // n_lon, k % n_lon). + n_lon = ds.sizes["lon"] + original = ds["air"].isel(time=0).values # (lat, lon) + flattened = uxds["air"].isel(time=0).values # (n_face,) + for k in (0, n_lon + 1, flattened.size - 1): # first, an interior, last + i, j = k // n_lon, k % n_lon + assert flattened[k] == original[i, j] + + # End-to-end: the mapped data must be subsettable (the symptom in #1410). + subset = uxds["air"].isel(time=0).subset.bounding_circle((-100.0, 40.0), 5) + assert "n_face" in subset.dims + assert subset.sizes["n_face"] > 0 diff --git a/uxarray/grid/grid.py b/uxarray/grid/grid.py index f79c6586a..0385bed7b 100644 --- a/uxarray/grid/grid.py +++ b/uxarray/grid/grid.py @@ -302,7 +302,7 @@ def from_dataset(cls, dataset, use_dual: bool | None = False, **kwargs): # custom source grid spec is provided source_grid_spec = kwargs.get("source_grid_spec", None) grid_ds = dataset - source_dims_dict = {} + source_dims_dict = kwargs.get("source_dims_dict") or {} else: try: if os.path.isdir(dataset): @@ -528,9 +528,18 @@ def from_structured( if ds is not None: return cls.from_dataset(ds) if lon is not None and lat is not None: - grid_ds = _read_structured_grid(lon, lat, tol) + # Capture the source dimension names so data variables mapped over + # (lon, lat) can later be flattened onto ``n_face`` by + # ``UxDataset.from_xarray`` (see GH #1410). ``xr.DataArray`` inputs + # carry their dim names; plain arrays fall back to "lon"/"lat". + lon_name = lon.dims[0] if isinstance(lon, xr.DataArray) else "lon" + lat_name = lat.dims[0] if isinstance(lat, xr.DataArray) else "lat" + + grid_ds = _read_structured_grid(np.asarray(lon), np.asarray(lat), tol) return cls.from_dataset( - grid_ds, source_dims_dict=None, source_grid_spec="structured" + grid_ds, + source_dims_dict={"n_face": (lon_name, lat_name)}, + source_grid_spec="Structured", ) else: raise ValueError(