DiffLogo/NAMESPACE at master · mgledi/DiffLogo · GitHub

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# Generated by roxygen2: do not edit by hand

export(ASN)
export(Alphabet)
export(DNA)
export(FULL_ALPHABET)
export(RNA)
export(calculatePvalue)
export(createDiffLogoObject)
export(diffLogo)
export(diffLogoFromPwm)
export(diffLogoTable)
export(diffLogoTableConfiguration)
export(differenceOfICs)
export(drawDiffLogoTable)
export(enrichDiffLogoObjectWithPvalues)
export(enrichDiffLogoTableWithPvalues)
export(extendPwmsFromAlignmentVector)
export(getAlphabetFromCharacters)
export(getAlphabetFromSequences)
export(getPwmFromAlignment)
export(getPwmFromAlignmentFile)
export(getPwmFromFastaFile)
export(getPwmFromFile)
export(getPwmFromHomerFile)
export(getPwmFromPfmOrJasparFile)
export(getPwmFromPwmFile)
export(getSequencesFromAlignmentFile)
export(getSequencesFromFastaFile)
export(informationContent)
export(lossOfAbsICDifferences)
export(multipleLocalPwmsAlignment)
export(normalizePWM)
export(normalizedDifferenceOfProbabilities)
export(prepareDiffLogoTable)
export(probabilities)
export(pwmDivergence)
export(seqLogo)
export(shannonDivergence)
export(sumOfAbsICDifferences)
export(sumOfAbsProbabilityDifferences)
export(sumProbabilities)
exportClasses(Alphabet)
exportClasses(DiffLogo)
importFrom(cba,order.optimal)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,rgb)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,plot.new)
importFrom(graphics,polygon)
importFrom(graphics,rect)
importFrom(graphics,text)
importFrom(stats,dgamma)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,var)
importFrom(utils,modifyList)
importFrom(utils,read.delim)