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REVEL plugin silently returns no score for nearly all missense variants when VEP is run with --refseq (default transcript-ID matching never succeeds)

Status: Open.

#849 In Ensembl/VEP_plugins;

· RSWilson1 opened on Jul 16, 2026

PromoterAI - silently returns no results when w/RefSeq if run with default parameters

Status: Open.

#848 In Ensembl/VEP_plugins;

· davmlaw opened on Jul 13, 2026

gnomADv4(GRCh38),Singularity,VEP 116 - LOEUF / LOFTEE plugins

Status: Open.

#847 In Ensembl/VEP_plugins;

· MolecularBiologyTech opened on Jul 12, 2026

PromoterAI and EVE Plugins not installed for 116 and missing instructions

Status: Open.

#845 In Ensembl/VEP_plugins;

· davmlaw opened on Jul 6, 2026

Preparing gnomAD v4 (GRCh38) LOEUF constraint data for VEP LOEUF plugin compatibility

Status: Open.

#836 In Ensembl/VEP_plugins;

· ManiVgenomics opened on May 6, 2026

Feature Request: Support protein sequence annotation for small structural variants (SVs)

Status: Open.

#804 In Ensembl/VEP_plugins;

· YuliuGuo opened on Aug 8, 2025

plugin LD error: [E::hts_open_format] Failed to open file

Status: Open.

#790 In Ensembl/VEP_plugins;

· TriangularCell opened on Apr 16, 2025

AlphaMissense has "benign" in GRCh37 data files and "likely_benign" in GRCh38

Status: Open.

#668 In Ensembl/VEP_plugins;

· davmlaw opened on Dec 1, 2023

Get all columns from CADD

Status: Open.

#481 In Ensembl/VEP_plugins;

· tkmamidi opened on Apr 2, 2022

Downstream plugin inconsistently reports a leading wild type (unmutated) amino acid

bug

Status: Open.

#342 In Ensembl/VEP_plugins;

· susannasiebert opened on Aug 5, 2020