Include Samtools and BWA in source. (Include both the binary and source for Samtools).
Add/update documentation for installing these.
Also put version checking into the script to test dependencies.
Background is that there is an incompatibility in processing read tags between pysam and newer versions of samtools.
Include Samtools and BWA in source. (Include both the binary and source for Samtools).
Add/update documentation for installing these.
Also put version checking into the script to test dependencies.
Background is that there is an incompatibility in processing read tags between pysam and newer versions of samtools.