LabAutomationAndScreening · ejfine · Jul 10, 2026 · Jul 9, 2026 · Jul 9, 2026 · Jul 10, 2026
diff --git a/.claude/.beads/.gitignore b/.claude/.beads/.gitignore
@@ -1,3 +1,10 @@
+# ============== WARNING ==============================================================================
+# File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+# See .config/.copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================
 # Dolt database (managed by Dolt, not git)
 dolt/
 dolt-access.lock

diff --git a/.claude/.beads/config.yaml b/.claude/.beads/config.yaml
@@ -1,3 +1,10 @@
+# ============== WARNING ==============================================================================
+# File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+# See .config/.copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================
 # Beads Configuration File
 # This file configures default behavior for all bd commands in this repository
 # All settings can also be set via environment variables (BD_* prefix)

diff --git a/.claude/CLAUDE.md b/.claude/CLAUDE.md
@@ -0,0 +1,11 @@
+@../AGENTS.md
+
+<!--
+============== WARNING ==============================================================================
+File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+See .config/.copier-managed-files.json for details.
+
+You are welcome to make changes to this file in your repo if they are custom to your project,
+but if the change should be shared with other projects, please backport it to the template repo.
+=====================================================================================================
+-->
diff --git a/.claude/commands/add-command.md b/.claude/commands/add-command.md
@@ -165,3 +165,13 @@ Show differences and suggest improvements.
 After creating: `/<command-name> [arguments]`
 
 Example: `/review` or `/ai:gpt5 "explain this code"`
+
+<!--
+============== WARNING ==============================================================================
+File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+See .config/.copier-managed-files.json for details.
+
+You are welcome to make changes to this file in your repo if they are custom to your project,
+but if the change should be shared with other projects, please backport it to the template repo.
+=====================================================================================================
+-->
diff --git a/.claude/commands/commit.md b/.claude/commands/commit.md
@@ -55,3 +55,13 @@ Follows [Conventional Commits](https://www.conventionalcommits.org/) standard.
 git add <files>
 git commit -m "feat(#123): add validation to user input form"
 ```
+
+<!--
+============== WARNING ==============================================================================
+File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+See .config/.copier-managed-files.json for details.
+
+You are welcome to make changes to this file in your repo if they are custom to your project,
+but if the change should be shared with other projects, please backport it to the template repo.
+=====================================================================================================
+-->
diff --git a/.claude/commands/create-adr.md b/.claude/commands/create-adr.md
@@ -238,3 +238,13 @@ To supersede an existing ADR:
 
 - After creating: Commit with `/commit`
 - If decision needs discussion: Create issue with `/create-issues`
+
+<!--
+============== WARNING ==============================================================================
+File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+See .config/.copier-managed-files.json for details.
+
+You are welcome to make changes to this file in your repo if they are custom to your project,
+but if the change should be shared with other projects, please backport it to the template repo.
+=====================================================================================================
+-->
diff --git a/.claude/commands/create-issues.md b/.claude/commands/create-issues.md
@@ -193,3 +193,13 @@ See <https://github.com/steveyegge/beads> for more information.
 - **After /create-issues**: Use `/red` to start TDD on first task
 - **During work**: Use `bd update` to add notes/findings back to issues
 - **When stuck**: Check `bd show ISSUE-ID` to review acceptance criteria
+
+<!--
+============== WARNING ==============================================================================
+File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+See .config/.copier-managed-files.json for details.
+
+You are welcome to make changes to this file in your repo if they are custom to your project,
+but if the change should be shared with other projects, please backport it to the template repo.
+=====================================================================================================
+-->
diff --git a/.claude/commands/gap.md b/.claude/commands/gap.md
@@ -43,3 +43,13 @@ If there are no gaps, confirm that everything discussed has been addressed.
 Gap: $ARGUMENTS
 
 **End of user arguments**
+
+<!--
+============== WARNING ==============================================================================
+File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+See .config/.copier-managed-files.json for details.
+
+You are welcome to make changes to this file in your repo if they are custom to your project,
+but if the change should be shared with other projects, please backport it to the template repo.
+=====================================================================================================
+-->
diff --git a/.claude/commands/green.md b/.claude/commands/green.md
@@ -108,3 +108,13 @@ This phase is **not part of the regular TDD workflow** and must only be applied
 - In the refactor phase, it is perfectly fine to refactor both test and implementation code. That said, completely new functionality is not allowed. Types, clean up, abstractions, and helpers are allowed as long as they do not introduce new behavior.
 - Adding types, interfaces, or a constant in order to replace magic values is perfectly fine during refactoring.
 - Provide the agent with helpful directions so that they do not get stuck when blocking them.
+
+<!--
+============== WARNING ==============================================================================
+File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+See .config/.copier-managed-files.json for details.
+
+You are welcome to make changes to this file in your repo if they are custom to your project,
+but if the change should be shared with other projects, please backport it to the template repo.
+=====================================================================================================
+-->
diff --git a/.claude/commands/issue.md b/.claude/commands/issue.md
@@ -160,3 +160,13 @@ This phase is **not part of the regular TDD workflow** and must only be applied
 - In the refactor phase, it is perfectly fine to refactor both test and implementation code. That said, completely new functionality is not allowed. Types, clean up, abstractions, and helpers are allowed as long as they do not introduce new behavior.
 - Adding types, interfaces, or a constant in order to replace magic values is perfectly fine during refactoring.
 - Provide the agent with helpful directions so that they do not get stuck when blocking them.
+
+<!--
+============== WARNING ==============================================================================
+File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+See .config/.copier-managed-files.json for details.
+
+You are welcome to make changes to this file in your repo if they are custom to your project,
+but if the change should be shared with other projects, please backport it to the template repo.
+=====================================================================================================
+-->
diff --git a/.claude/commands/polish.md b/.claude/commands/polish.md
@@ -183,3 +183,13 @@ Additional cross-cutting checks:
 Polish: $ARGUMENTS
 
 **End of user arguments**
+
+<!--
+============== WARNING ==============================================================================
+File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+See .config/.copier-managed-files.json for details.
+
+You are welcome to make changes to this file in your repo if they are custom to your project,
+but if the change should be shared with other projects, please backport it to the template repo.
+=====================================================================================================
+-->
diff --git a/.claude/commands/red.md b/.claude/commands/red.md
@@ -124,3 +124,13 @@ Structure each test with clear phases:
 - **Arrange**: Set up test data and preconditions (keep minimal)
 - **Act**: Execute the single action being tested
 - **Assert**: Verify the expected outcome with specific assertions
+
+<!--
+============== WARNING ==============================================================================
+File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+See .config/.copier-managed-files.json for details.
+
+You are welcome to make changes to this file in your repo if they are custom to your project,
+but if the change should be shared with other projects, please backport it to the template repo.
+=====================================================================================================
+-->
diff --git a/.claude/commands/refactor.md b/.claude/commands/refactor.md
@@ -125,3 +125,13 @@ When refactoring implementation, watch for **Peeping Tom** tests that:
 If tests fail after a pure refactoring (no behavior change), consider whether the tests are testing implementation rather than behavior.
 
 1. **Consistency check** - Look for inconsistent patterns, naming conventions, or structure across the codebase
+
+<!--
+============== WARNING ==============================================================================
+File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+See .config/.copier-managed-files.json for details.
+
+You are welcome to make changes to this file in your repo if they are custom to your project,
+but if the change should be shared with other projects, please backport it to the template repo.
+=====================================================================================================
+-->
diff --git a/.claude/commands/research.md b/.claude/commands/research.md
@@ -94,3 +94,13 @@ List all source links with brief descriptions. This section is required.
 - Write concise, actionable content
 - Use active voice throughout
 - **Do not create output files** - present findings directly in conversation unless user explicitly requests a file
+
+<!--
+============== WARNING ==============================================================================
+File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+See .config/.copier-managed-files.json for details.
+
+You are welcome to make changes to this file in your repo if they are custom to your project,
+but if the change should be shared with other projects, please backport it to the template repo.
+=====================================================================================================
+-->
diff --git a/.claude/commands/simplify.md b/.claude/commands/simplify.md
@@ -82,3 +82,13 @@ When refactoring implementation, watch for **Peeping Tom** tests that:
 - Break on any refactoring even when behavior is preserved
 
 If tests fail after a pure refactoring (no behavior change), consider whether the tests are testing implementation rather than behavior.
+
+<!--
+============== WARNING ==============================================================================
+File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+See .config/.copier-managed-files.json for details.
+
+You are welcome to make changes to this file in your repo if they are custom to your project,
+but if the change should be shared with other projects, please backport it to the template repo.
+=====================================================================================================
+-->
diff --git a/.claude/commands/spike.md b/.claude/commands/spike.md
@@ -101,3 +101,13 @@ This phase is **not part of the regular TDD workflow** and must only be applied
 - In the refactor phase, it is perfectly fine to refactor both test and implementation code. That said, completely new functionality is not allowed. Types, clean up, abstractions, and helpers are allowed as long as they do not introduce new behavior.
 - Adding types, interfaces, or a constant in order to replace magic values is perfectly fine during refactoring.
 - Provide the agent with helpful directions so that they do not get stuck when blocking them.
+
+<!--
+============== WARNING ==============================================================================
+File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+See .config/.copier-managed-files.json for details.
+
+You are welcome to make changes to this file in your repo if they are custom to your project,
+but if the change should be shared with other projects, please backport it to the template repo.
+=====================================================================================================
+-->
diff --git a/.claude/commands/summarize.md b/.claude/commands/summarize.md
@@ -60,3 +60,13 @@ If Beads MCP is available, check for task tracking status and ask if the user wa
 3. Include Beads context in the summary
 
 Use AskUserQuestion to confirm Beads integration preferences.
+
+<!--
+============== WARNING ==============================================================================
+File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+See .config/.copier-managed-files.json for details.
+
+You are welcome to make changes to this file in your repo if they are custom to your project,
+but if the change should be shared with other projects, please backport it to the template repo.
+=====================================================================================================
+-->
diff --git a/.claude/commands/tdd-review.md b/.claude/commands/tdd-review.md
@@ -108,3 +108,13 @@ Output a structured report:
 TDD-review: $ARGUMENTS
 
 **End of user arguments**
+
+<!--
+============== WARNING ==============================================================================
+File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+See .config/.copier-managed-files.json for details.
+
+You are welcome to make changes to this file in your repo if they are custom to your project,
+but if the change should be shared with other projects, please backport it to the template repo.
+=====================================================================================================
+-->
diff --git a/.claude/commands/tdd.md b/.claude/commands/tdd.md
@@ -100,3 +100,13 @@ TDD: $ARGUMENTS
 **End of user arguments**
 
 Please continue with the user input above, applying TDD approach.
+
+<!--
+============== WARNING ==============================================================================
+File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+See .config/.copier-managed-files.json for details.
+
+You are welcome to make changes to this file in your repo if they are custom to your project,
+but if the change should be shared with other projects, please backport it to the template repo.
+=====================================================================================================
+-->
diff --git a/.claude/helpers/merge-claude-settings.sh b/.claude/helpers/merge-claude-settings.sh
@@ -96,3 +96,11 @@ merged_json=$(echo "$parsed_json" | jq -s '
 echo "$merged_json" > settings.json
 
 echo "✓ Merged settings.json from JSONC files"
+
+# ============== WARNING ==============================================================================
+# File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+# See .config/.copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================
diff --git a/.claude/hooks/bash-chain-guard.js b/.claude/hooks/bash-chain-guard.js
@@ -24,3 +24,13 @@ process.stdin.on("end", () => {
     // Silent fail — never block on hook errors
   }
 });
+
+/*
+ * ============== WARNING ==============================================================================
+ * File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+ * See .config/.copier-managed-files.json for details.
+ *
+ * You are welcome to make changes to this file in your repo if they are custom to your project,
+ * but if the change should be shared with other projects, please backport it to the template repo.
+ * =====================================================================================================
+ */
diff --git a/.claude/hooks/caveman-activate.js b/.claude/hooks/caveman-activate.js
@@ -116,3 +116,13 @@ if (skillContent) {
 }
 
 process.stdout.write(output);
+
+/*
+ * ============== WARNING ==============================================================================
+ * File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+ * See .config/.copier-managed-files.json for details.
+ *
+ * You are welcome to make changes to this file in your repo if they are custom to your project,
+ * but if the change should be shared with other projects, please backport it to the template repo.
+ * =====================================================================================================
+ */
diff --git a/.claude/hooks/caveman-config.js b/.claude/hooks/caveman-config.js
@@ -152,3 +152,13 @@ function readFlag(flagPath) {
 }
 
 module.exports = { getDefaultMode, getConfigDir, getConfigPath, VALID_MODES, safeWriteFlag, readFlag };
+
+/*
+ * ============== WARNING ==============================================================================
+ * File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+ * See .config/.copier-managed-files.json for details.
+ *
+ * You are welcome to make changes to this file in your repo if they are custom to your project,
+ * but if the change should be shared with other projects, please backport it to the template repo.
+ * =====================================================================================================
+ */
diff --git a/.claude/hooks/caveman-mode-tracker.js b/.claude/hooks/caveman-mode-tracker.js
@@ -94,3 +94,13 @@ process.stdin.on('end', () => {
     // Silent fail
   }
 });
+
+/*
+ * ============== WARNING ==============================================================================
+ * File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+ * See .config/.copier-managed-files.json for details.
+ *
+ * You are welcome to make changes to this file in your repo if they are custom to your project,
+ * but if the change should be shared with other projects, please backport it to the template repo.
+ * =====================================================================================================
+ */
diff --git a/.claude/settings/basics.jsonc b/.claude/settings/basics.jsonc
@@ -1,3 +1,12 @@
+/*
+ * ============== WARNING ==============================================================================
+ * File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+ * See .config/.copier-managed-files.json for details.
+ *
+ * You are welcome to make changes to this file in your repo if they are custom to your project,
+ * but if the change should be shared with other projects, please backport it to the template repo.
+ * =====================================================================================================
+ */
 {
   // Basic configuration for Claude Code
   // General settings, environment variables, and UI customization

diff --git a/.claude/settings/hooks.jsonc b/.claude/settings/hooks.jsonc
@@ -1,3 +1,12 @@
+/*
+ * ============== WARNING ==============================================================================
+ * File is managed by copier template: gh:LabAutomationAndScreening/copier-base-template.git
+ * See .config/.copier-managed-files.json for details.
+ *
+ * You are welcome to make changes to this file in your repo if they are custom to your project,
+ * but if the change should be shared with other projects, please backport it to the template repo.
+ * =====================================================================================================
+ */
 {
   "hooks": {
     "SessionStart": [