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1. CEGRcode/scriptmanager CEGRcode/scriptmanager Public

   genomics toolbox that supports both graphical and command-line execution

   Java 15 6

2. EpiGenomicsCode/ProteinStructure-OOD EpiGenomicsCode/ProteinStructure-OOD Public

   HTML 6 4

3. CEGRcode/GenoPipe CEGRcode/GenoPipe Public

   Toolkit for characterizing the genotype of NGS datasets

   Shell 4 1

4. EpiGenomicsCode/ChromEnhancer EpiGenomicsCode/ChromEnhancer Public

   Shell 1

5. ArchAlign ArchAlign Public

   ArchAlign: coordinate-free chromatin alignment reveals novel architectures

   C++

6. ArchTEx ArchTEx Public

   Accurate Extraction and Visualization of Next-Generation Sequence data

   Java