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Integration Testing CI Test Failure on python 3.14

Status: Open.

#1020 In scverse/pertpy;

· scverse-issue-creator opened on Jun 12, 2026

Integration Testing CI Test Failure on python 3.12

Status: Open.

#1019 In scverse/pertpy;

· scverse-issue-creator opened on Jun 12, 2026

tascCODA: global theta collapses to prior under numpyro, yielding no credible effects

Status: Open.

#1015 In scverse/pertpy;

· Zethson opened on Jun 10, 2026

Empty index when using pt.tl.PseudobulkSpace()

bugSomething isn't workingSomething isn't working

Status: Open.

#1003 In scverse/pertpy;

· LuisHeinzlmeier opened on Jun 1, 2026

Consistent significance threshold naming

enhancementNew feature or requestNew feature or request

Status: Open.

#1002 In scverse/pertpy;

· LuisHeinzlmeier opened on May 30, 2026

Consider making Jax optional

enhancementNew feature or requestNew feature or request

Status: Open.

#990 In scverse/pertpy;

· Zethson opened on May 24, 2026

Add mean logFC plots for DGE

enhancementNew feature or requestNew feature or request

Status: Open.

#969 In scverse/pertpy;

· LuisHeinzlmeier opened on May 12, 2026

Integration Testing CI Test Failure on python 3.14 with prerelease dependencies

Status: Open.

#962 In scverse/pertpy;

· scverse-issue-creator opened on May 9, 2026

MUSIC-style topic modeling

enhancementNew feature or requestNew feature or request

Status: Open.

#855 In scverse/pertpy;

· JohnGoertz opened on Sep 30, 2025

MA plots for DE results

enhancementNew feature or requestNew feature or request

Status: Open.

#803 In scverse/pertpy;

· mschilli87 opened on Jun 16, 2025

milo mixed effect models

enhancementNew feature or requestNew feature or request

Status: Open.

#747 In scverse/pertpy;

· liezeltamon opened on Apr 17, 2025

Move differential expression analysis to separate package

enhancementNew feature or requestNew feature or request

Status: Open.

#730 In scverse/pertpy;

· grst opened on Mar 19, 2025