Amplicon sequencing analysis workflow using DADA2 and QIIME2

Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.

A fast and scalable phylogenetic tree viewer for microbiome data analysis

Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

A Python package for microbiome sequencing analysis with QIIME 2

Materials and presentation for the 2022 ISB Microbiome course.

Materials and presentation for the 2023 ISB Microbiome course.

The importance of converting relative to absolute abundance in the context of microbial ecology: Introducing the user-friendly DspikeIn R package

Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2

End-to-end Metagenomic Intelligence and Comprehensive Omics Suite (Mammoth Cup 2024 Entry) | 端到端宏基因组综合分析平台（猛犸杯2024参赛项目）

A Qiime plugin for MICOM.

Qiime2 Artifact eXtractor

QIIME2 worklflow. From raw data to a feature table.

Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.

Effect size calculations for microbiome data

Qiime2 and DADA2 are one of the latest bioinformatics tools used in 16S RNA analysis. The current Qiime2 and DADA2 pipelines support End to End 16S RNA analysis, among other analyses.

Microbiome analysis with QIIME2

This is a QIIME2 plugin that annotates sequence data with antimicrobial resistance gene information from CARD.

QIIME2 plugin for PCA analysis of protein sequence phylogeny.