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CLI file path conflict with XLSX template

Status: Open.

#130 In usegalaxy-eu/ena-upload-cli;

· handibles opened on Apr 10, 2026

run file read_type column stopping submission

Status: Open.

#129 In usegalaxy-eu/ena-upload-cli;

· handibles opened on Apr 9, 2026

Use the JSON API instead of the xml API

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#122 In usegalaxy-eu/ena-upload-cli;

· bedroesb opened on Feb 16, 2026

insert_size does not accept NaN (no value) while being optional

Status: Open.

#118 In usegalaxy-eu/ena-upload-cli;

· bedroesb opened on Sep 18, 2025

Action modify doesn't fetch scientific name when taxon ID given

Status: Open.

#110 In usegalaxy-eu/ena-upload-cli;

· Cecilia-Sensalari opened on Apr 8, 2025

Use Click instead of arparse for cli commands

Status: Open.

#109 In usegalaxy-eu/ena-upload-cli;

· bedroesb opened on Apr 3, 2025

--draft mode does not dump generated checksums or fetched taxonid/scientific name

Status: Open.

#108 In usegalaxy-eu/ena-upload-cli;

· bedroesb opened on Mar 31, 2025

Adding support for existing Biosample

Status: Open.

#106 In usegalaxy-eu/ena-upload-cli;

· cgirardot opened on Feb 4, 2025

Do not upload to ftp when it is already present

Status: Open.

#104 In usegalaxy-eu/ena-upload-cli;

· bedroesb opened on Jan 21, 2025

Improve PowerShell command to use wildcards for input data

Status: Open.

#99 In usegalaxy-eu/ena-upload-cli;

· Cecilia-Sensalari opened on Nov 26, 2024

FTP login error is currently an IO error which is not really fitting

Status: Open.

#98 In usegalaxy-eu/ena-upload-cli;

· bedroesb opened on Nov 5, 2024

Add support for the submission of analysis objects

enhancementNew feature or requestNew feature or request

Status: Open.

#87 In usegalaxy-eu/ena-upload-cli;

· bedroesb opened on Sep 19, 2023