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feat: publication-style pileups visualizations

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#149 In zavolanlab/mirflowz;

· deliaBlue opened on Jan 19, 2025

feat: write a custom collapsing script

low priority

Status: Open.

#128 In zavolanlab/mirflowz;

· deliaBlue opened on Dec 2, 2023

build: check sub-environment r.yaml

low priority

Status: Open.

#117 In zavolanlab/mirflowz;

· deliaBlue opened on Nov 4, 2023

feat: add versioning, changelog and release notes

enhancementNew feature or requestNew feature or request

Status: Open.

#103 In zavolanlab/mirflowz;

· deliaBlue opened on Sep 16, 2023

Add configuration profiles

design

Status: Open.

#95 In zavolanlab/mirflowz;

· deliaBlue opened on Jun 29, 2023

refactor: merge tables with more than 2 fields

refactor

Status: Open.

#87 In zavolanlab/mirflowz;

· deliaBlue opened on May 24, 2023

Use module to turn SAM files into BAM files

design

low priority

refactor

Status: Open.

#83 In zavolanlab/mirflowz;

· deliaBlue opened on May 17, 2023

upload coverage report on codecov

Status: Open.

#74 In zavolanlab/mirflowz;

· deliaBlue opened on Apr 28, 2023

create unit tests

Status: Open.

#63 In zavolanlab/mirflowz;

· deliaBlue opened on Apr 12, 2023

create unit tests for sam_uncollapse.pl

low priority

Status: Open.

#62 In zavolanlab/mirflowz;

· deliaBlue opened on Apr 12, 2023

create unit tests for sam_trx_to_sam_gen.pl

low priority

Status: Open.

#61 In zavolanlab/mirflowz;

· deliaBlue opened on Apr 12, 2023

create unit tests for sam_remove_duplicates_inferior_alignments_multimappers.1_7.pl

low priority

Status: Open.

#59 In zavolanlab/mirflowz;

· deliaBlue opened on Apr 12, 2023